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Commit 5fd10101 authored by rahix's avatar rahix
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Merge 'ECG pause mode' 

With >1s press on the TOP_RIGHT button you can pause the screen update.
You can then scroll through the increases 4s buffer with BUTTON_LEFT and
BOTTOM_RIGHT. Another press on TOP_RIGHT brings you back into the normal
mode.  The logging operation doesn't get interrupted when pausing the
screen.

See merge request card10/firmware!257
parents 625ae264 ea5a30d9
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1 merge request!257feat(ecg-app): add pause-mode
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Stage: deploy
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preload/apps/ecg/__init__.py
+ 328
− 242
View file @ 5fd10101
import os
import display
import utime
import buttons
import max30001
import math
import struct
WIDTH = 160
HEIGHT = 80
OFFSET = 50
ECG_RATE = 128
HISTORY_MAX = ECG_RATE * 2
DRAW_AFTER_SAMPLES = 5
SCALE_FACTOR = 30
MODE_USB = "USB"
MODE_FINGER = "Finger"
FILEBUFFERBLOCK = 4096
COLOR_BACKGROUND = [0, 0, 0]
COLOR_LINE = [255, 255, 255]
COLOR_TEXT = [255, 255, 255]
COLOR_MODE_FINGER = [0, 255, 0]
COLOR_MODE_USB = [0, 0, 255]
COLOR_WRITE_FG = [255, 255, 255]
COLOR_WRITE_BG = [255, 0, 0]
current_mode = MODE_FINGER
history = []
filebuffer = bytearray()
write = 0
bias = True
update_screen = 0
pause_screen = 0
sensor = 0
disp = display.open()
def callback_ecg(datasets):
global update_screen, history, filebuffer, write
if len(datasets) > 0:
for value in datasets:
history.append(value)
update_screen += len(datasets)
if len(history) > HISTORY_MAX:
r = len(history) - HISTORY_MAX
for i in range(r):
history.pop(0)
# buffer for writes
if write > 0:
if len(datasets) > 0:
for value in datasets:
filebuffer.extend(struct.pack("h", value))
if len(filebuffer) >= FILEBUFFERBLOCK:
write_filebuffer()
# don't update on every callback
if update_screen >= DRAW_AFTER_SAMPLES:
# print("history: %i, filebuffer: %i" % (len(history), len(filebuffer)))
draw_histogram()
update_screen = 0
def write_filebuffer():
global write, filebuffer
# write to file
chars = ""
lt = utime.localtime(write)
filename = "/ecg-%04d-%02d-%02d_%02d%02d%02d.log" % (
lt[0],
lt[1],
lt[2],
lt[3],
lt[4],
lt[5],
)
# write stuff to disk
# print("Write %i bytes to %s" % (len(filebuffer), filename))
try:
f = open(filename, "ab")
f.write(filebuffer)
f.close()
except OSError as e:
print("Please check the file or filesystem", e)
write = 0
pause_screen = -1
disp.clear(COLOR_BACKGROUND)
disp.print("IO Error", posy=0, fg=COLOR_TEXT)
disp.print("Please check", posy=20, fg=COLOR_TEXT)
disp.print("your", posy=40, fg=COLOR_TEXT)
disp.print("filesystem", posy=60, fg=COLOR_TEXT)
disp.update()
close_sensor()
except:
print("Unexpected error, stop writeing logfile")
write = 0
filebuffer = bytearray()
return
def open_sensor():
global sensor
sensor = max30001.MAX30001(
usb=(False if current_mode == MODE_FINGER else True),
bias=bias,
sample_rate=ECG_RATE,
callback=callback_ecg,
)
def close_sensor():
global sensor
sensor.close()
def toggle_mode():
global current_mode
close_sensor()
current_mode = MODE_USB if current_mode == MODE_FINGER else MODE_FINGER
open_sensor()
def toggle_bias():
global bias
close_sensor()
bias = False if bias == True else True
open_sensor()
return
def toggle_write():
global write, disp, pause_screen
pause_screen = utime.time_ms() + 1000
disp.clear(COLOR_BACKGROUND)
if write > 0:
write_filebuffer()
write = 0
disp.print("Stop", posx=50, posy=20, fg=COLOR_TEXT)
disp.print("logging", posx=30, posy=40, fg=COLOR_TEXT)
else:
filebuffer = bytearray()
write = utime.time()
disp.print("Start", posx=45, posy=20, fg=COLOR_TEXT)
disp.print("logging", posx=30, posy=40, fg=COLOR_TEXT)
disp.update()
return
def draw_histogram():
global disp, history, current_mode, bias, write, pause_screen
# skip rendering due to message beeing shown
if pause_screen == -1:
return
elif pause_screen > 0:
t = utime.time_ms()
if t > pause_screen:
pause_screen = 0
else:
return
disp.clear(COLOR_BACKGROUND)
# get max value and calc scale
value_max = 0
for value in history:
if abs(value) > value_max:
value_max = abs(value)
scale = SCALE_FACTOR / (value_max if value_max > 0 else 1)
# draw histogram
old = False
x = 0
samples = len(history)
for i, value in enumerate(history):
if old == False:
old = (x, int(value * scale) + OFFSET)
x += 1
continue
elif i > samples - WIDTH:
disp.line(old[0], old[1], x, int(value * scale) + OFFSET, col=COLOR_LINE)
old = (x, int(value * scale) + OFFSET)
x += 1
# draw text: mode/bias/write
disp.print(
current_mode + ("+Bias" if bias else ""),
posx=0,
posy=0,
fg=(COLOR_MODE_FINGER if current_mode == MODE_FINGER else COLOR_MODE_USB),
)
# announce writing ecg log
if write > 0:
t = utime.time()
if write > 0 and t % 2 == 0:
disp.print("LOG", posx=0, posy=60, fg=COLOR_WRITE_FG, bg=COLOR_WRITE_BG)
disp.update()
def main():
# show button layout
disp.clear(COLOR_BACKGROUND)
disp.print(" BUTTONS ", posx=0, posy=0, fg=COLOR_TEXT)
disp.print("Finger/USB>", posx=0, posy=20, fg=COLOR_MODE_FINGER)
disp.print(" Bias >", posx=0, posy=40, fg=COLOR_MODE_USB)
disp.print("< Write Log", posx=0, posy=60, fg=COLOR_WRITE_BG)
disp.update()
utime.sleep(3)
# start ecg
open_sensor()
while True:
button_pressed = False
while True:
v = buttons.read(
buttons.BOTTOM_LEFT | buttons.BOTTOM_RIGHT | buttons.TOP_RIGHT
)
if v == 0:
button_pressed = False
if not button_pressed and v & buttons.BOTTOM_LEFT != 0:
button_pressed = True
toggle_write()
elif not button_pressed and v & buttons.BOTTOM_RIGHT != 0:
button_pressed = True
toggle_bias()
elif not button_pressed and v & buttons.TOP_RIGHT != 0:
button_pressed = True
toggle_mode()
pass
if __name__ == "__main__":
main()
import os
import display
import utime
import buttons
import max30001
import math
import struct
WIDTH = 160
HEIGHT = 80
OFFSET_Y = 49
ECG_RATE = 128
HISTORY_MAX = ECG_RATE * 4
DRAW_AFTER_SAMPLES = 5
SCALE_FACTOR = 30
MODE_USB = "USB"
MODE_FINGER = "Finger"
FILEBUFFERBLOCK = 4096
COLOR_BACKGROUND = [0, 0, 0]
COLOR_LINE = [255, 255, 255]
COLOR_TEXT = [255, 255, 255]
COLOR_MODE_FINGER = [0, 255, 0]
COLOR_MODE_USB = [0, 0, 255]
COLOR_WRITE_FG = [255, 255, 255]
COLOR_WRITE_BG = [255, 0, 0]
current_mode = MODE_FINGER
history = []
filebuffer = bytearray()
write = 0
bias = True
update_screen = 0
pause_screen = 0
pause_histogram = False
histogram_offset = 0
sensor = 0
disp = display.open()
def callback_ecg(datasets):
global update_screen, history, filebuffer, write
update_screen += len(datasets)
# update histogram datalist
if pause_histogram == False:
if len(datasets) > 0:
for value in datasets:
history.append(value)
if len(history) > HISTORY_MAX:
r = len(history) - HISTORY_MAX
for i in range(r):
history.pop(0)
# buffer for writes
if write > 0:
if len(datasets) > 0:
for value in datasets:
filebuffer.extend(struct.pack("h", value))
if len(filebuffer) >= FILEBUFFERBLOCK:
write_filebuffer()
# don't update on every callback
if update_screen >= DRAW_AFTER_SAMPLES:
draw_histogram()
def write_filebuffer():
global write, filebuffer
# write to file
chars = ""
lt = utime.localtime(write)
filename = "/ecg-%04d-%02d-%02d_%02d%02d%02d.log" % (
lt[0],
lt[1],
lt[2],
lt[3],
lt[4],
lt[5],
)
# write stuff to disk
try:
f = open(filename, "ab")
f.write(filebuffer)
f.close()
except OSError as e:
print("Please check the file or filesystem", e)
write = 0
pause_screen = -1
disp.clear(COLOR_BACKGROUND)
disp.print("IO Error", posy=0, fg=COLOR_TEXT)
disp.print("Please check", posy=20, fg=COLOR_TEXT)
disp.print("your", posy=40, fg=COLOR_TEXT)
disp.print("filesystem", posy=60, fg=COLOR_TEXT)
disp.update()
close_sensor()
except:
print("Unexpected error, stop writeing logfile")
write = 0
filebuffer = bytearray()
return
def open_sensor():
global sensor
sensor = max30001.MAX30001(
usb=(False if current_mode == MODE_FINGER else True),
bias=bias,
sample_rate=ECG_RATE,
callback=callback_ecg,
)
def close_sensor():
global sensor
sensor.close()
def toggle_mode():
global current_mode
close_sensor()
current_mode = MODE_USB if current_mode == MODE_FINGER else MODE_FINGER
open_sensor()
def toggle_bias():
global bias
close_sensor()
bias = False if bias == True else True
open_sensor()
return
def toggle_write():
global write, disp, pause_screen
pause_screen = utime.time_ms() + 1000
disp.clear(COLOR_BACKGROUND)
if write > 0:
write_filebuffer()
write = 0
disp.print("Stop", posx=50, posy=20, fg=COLOR_TEXT)
disp.print("logging", posx=30, posy=40, fg=COLOR_TEXT)
else:
filebuffer = bytearray()
write = utime.time()
disp.print("Start", posx=45, posy=20, fg=COLOR_TEXT)
disp.print("logging", posx=30, posy=40, fg=COLOR_TEXT)
disp.update()
return
def toggle_pause():
global pause_histogram, histogram_offset, history
if pause_histogram == True:
pause_histogram = False
history = []
else:
pause_histogram = True
histogram_offset = 0
def draw_histogram():
global disp, history, current_mode, bias, write, pause_screen, update_screen
# skip rendering due to message beeing shown
if pause_screen == -1:
return
elif pause_screen > 0:
t = utime.time_ms()
if t > pause_screen:
pause_screen = 0
else:
return
disp.clear(COLOR_BACKGROUND)
# offset in pause_histogram mode
samples = len(history)
s_start = samples - (histogram_offset + (ECG_RATE * 2))
s_end = samples - (histogram_offset + 1)
s_draw = s_end - (WIDTH - 1)
# get max value and calc scale
value_max = 0
for i, value in enumerate(history):
if i >= s_start and i <= s_end and abs(value) > value_max:
value_max = abs(value)
scale = SCALE_FACTOR / (value_max if value_max > 0 else 1)
# draw histogram
old = False
x = 0
for i, value in enumerate(history):
if old == False:
old = value
x += 1
continue
elif i > s_start and i > s_draw and i < s_end:
oldy = int(old * scale)
if oldy < -SCALE_FACTOR:
oldy = -SCALE_FACTOR
elif oldy > SCALE_FACTOR:
oldy = SCALE_FACTOR
disp.line(
x - 1, oldy + OFFSET_Y, x, int(value * scale) + OFFSET_Y, col=COLOR_LINE
)
old = value
x += 1
# draw text: mode/bias/write
if pause_histogram == True:
disp.print(
"Pause"
+ (
" -%0.1fs" % (histogram_offset / ECG_RATE)
if histogram_offset > 0
else ""
),
posx=0,
posy=0,
fg=COLOR_TEXT,
)
else:
disp.print(
current_mode + ("+Bias" if bias else ""),
posx=0,
posy=0,
fg=(COLOR_MODE_FINGER if current_mode == MODE_FINGER else COLOR_MODE_USB),
)
# announce writing ecg log
if write > 0:
t = utime.time()
if write > 0 and t % 2 == 0:
disp.print("LOG", posx=0, posy=60, fg=COLOR_WRITE_FG, bg=COLOR_WRITE_BG)
disp.update()
update_screen = 0
def main():
global pause_histogram, histogram_offset
# show button layout
disp.clear(COLOR_BACKGROUND)
disp.print(" BUTTONS ", posx=0, posy=0, fg=COLOR_TEXT)
disp.print("Finger/USB>", posx=0, posy=20, fg=COLOR_MODE_FINGER)
disp.print(" Bias >", posx=0, posy=40, fg=COLOR_MODE_USB)
disp.print("< Write Log", posx=0, posy=60, fg=COLOR_WRITE_BG)
disp.update()
utime.sleep(3)
# start ecg
open_sensor()
while True:
button_pressed = {"BOTTOM_LEFT": 0, "BOTTOM_RIGHT": 0, "TOP_RIGHT": 0}
while True:
v = buttons.read(
buttons.BOTTOM_LEFT | buttons.BOTTOM_RIGHT | buttons.TOP_RIGHT
)
# BUTTOM LEFT
if button_pressed["BOTTOM_LEFT"] == 0 and v & buttons.BOTTOM_LEFT != 0:
button_pressed["BOTTOM_LEFT"] = utime.time_ms()
if pause_histogram == False:
toggle_write()
else:
l = len(history)
histogram_offset += ECG_RATE / 2
if l - histogram_offset < WIDTH:
histogram_offset = l - WIDTH
if button_pressed["BOTTOM_LEFT"] > 0 and v & buttons.BOTTOM_LEFT == 0:
duration = utime.time_ms() - button_pressed["BOTTOM_LEFT"]
button_pressed["BOTTOM_LEFT"] = 0
# BUTTOM RIGHT
if button_pressed["BOTTOM_RIGHT"] == 0 and v & buttons.BOTTOM_RIGHT != 0:
button_pressed["BOTTOM_RIGHT"] = utime.time_ms()
if pause_histogram == False:
toggle_bias()
else:
histogram_offset -= ECG_RATE / 2
histogram_offset -= histogram_offset % (ECG_RATE / 2)
if histogram_offset < 0:
histogram_offset = 0
if button_pressed["BOTTOM_RIGHT"] > 0 and v & buttons.BOTTOM_RIGHT == 0:
duration = utime.time_ms() - button_pressed["BOTTOM_RIGHT"]
button_pressed["BOTTOM_RIGHT"] = 0
# TOP RIGHT
# down, and still pressed
if button_pressed["TOP_RIGHT"] > 0 and v & buttons.TOP_RIGHT != 0:
duration = utime.time_ms() - button_pressed["TOP_RIGHT"]
if duration > 1000:
button_pressed["TOP_RIGHT"] = -1
toggle_pause()
# register down event
elif button_pressed["TOP_RIGHT"] == 0 and v & buttons.TOP_RIGHT != 0:
button_pressed["TOP_RIGHT"] = utime.time_ms()
# register up event but event already called
if button_pressed["TOP_RIGHT"] == -1 and v & buttons.TOP_RIGHT == 0:
button_pressed["TOP_RIGHT"] = 0
# register normal up event
elif button_pressed["TOP_RIGHT"] > 0 and v & buttons.TOP_RIGHT == 0:
duration = utime.time_ms() - button_pressed["TOP_RIGHT"]
button_pressed["TOP_RIGHT"] = 0
if pause_histogram == True:
toggle_pause()
else:
toggle_mode()
pass
if __name__ == "__main__":
main()
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